Thursday, June 7, 2012

Collaborative Genes

By Kristopher Hite

The trait I admire most in a fellow thinker is the ability to entertain an idea without necessarily swallowing it whole. With that in mind, I eagerly listened to E.O. Wilson's On the Shoulders of Giants address at the World Science Festival in New York City last week.

I recently wrote about Wilson and his controversial rethink of altruism. Long story short, Wilson has created a ruckus by abandoning his long-held belief that cooperative and altruistic behavior among organisms can be simply explained as a veiled selfishness. When an organism appears to behave altruistically by sacrificing themselves or putting themselves in danger it is actually just the individual genes jockeying to survive by keeping identical copies of themselves alive in their relatives. This theory is known as inclusive fitness.

 In place of inclusive fitness E.O. Wilson now seems to embrace the controversial concept of “group selection.” This is the idea that genes for altruism persist by benefiting the entire group. The altruistic trait persists by helping groups themselves multiply; grow into larger and larger networks with more and more biomass. In group selection theory this all happens despite the fact that the altruistic trait is detrimental to the individual. Altruistic genes that band together and cooperate out compete groups of genes that act selfishly.

To me, both models seem like they could apply to different genes.

After the address, I had the rare opportunity to ask Wilson directly about his recent change of heart. I asked,
"If the gene is the basic unit of selection—the physical thing that makes it though the sieve of natural selection—then why do we need a 'group selection' model? And if a gene is not the basic unit of selection, then what is?" 

The question struck a chord. Wilson replied that he had been anticipating it, in fact, and quickly acknowledged that that his recent move away from the theory of inclusive fitness had rankled many people, including the famed evolutionary biologist Richard Dawkins who has popularized the selfish-gene view of evolution and has been a vocal critic of group selection. But Wilson stuck to his guns, saying,

"Yes, the gene is the basic unit of selection, but the phenotype is the target. It is as simple as that." 

Wilson flashed a smile, and for a moment I was starstruck, caught up in the glow of Wilson's legendary charm. The spell broke when I began to really chew on his answer. I was still extremely confused about how the concept of "phenotype as target" was supposed to justify group-selection theory. As I rode the elevator downstairs, I felt a pang of guilt for not pressing harder. I imagined a tiny Richard Dawkins sitting on my shoulder, eyebrows in a scowl, chiding me, "Kristopher, don't you remember how beautifully I explained all this to you in my book, The Selfish Gene?? How could you turn on me? Hamilton had it right, the gene is the one ring to rule them all everything else is myth!"

On the other shoulder (the "giant shoulder," one might say), I pictured a miniature E.O. Wilson, still charming in his diminutive tweed blazer, reassuring me, "Kristopher, everything is going to be alright as long as we work together in this big happy peer-reviewing group of ours."

I was, and still am, torn. As I stepped out of the elevator, I serendipitously met Nobel Laureate Harold Varmus, former head of the NIH, and I took the opportunity to ask him what he thought E.O. Wilson meant when he said "phenotype is the target of selection." Dr. Varmus clarified—somewhat. Phenotype, he explained, is the vehicle genes ride inside the physical manifestation of the genes. Selective environmental pressure, like changing atmospheric oxygen levels, or changing local climates are not capable of acting directly on any single isolated gene.

After I directed Dr. Varmus and his wife to the Christopher Street subway station, I continued to replay his answer in my head. If natural selection happens at the level of the physical manifestation of the genes – the phenotype, and there is no organism in existence with only one gene inside, then all genes must be collaborative in a sense.

And this is where I am in my thought process. If you have any corrections or criticisms I welcome them. They will only add to my understanding.

Wednesday, June 6, 2012

Visions of an illuminated tree

The Phylogenetic Christmas Tree; Lighting the tree of life.

Hi, my name is Kristopher Hite and I am a science educator. Every time I learn something new about the natural world I want to climb the tallest structure I can find and shout it at the top of my lungs!

I did precisely that last week as I live-blogged the World Science Festival. After filling my brain to the brim with new and exciting ideas at the festival, I just kep going!  I walked into another deluge of inspiration at the American Museum of Natural History. Inside I witnessed the best special museum exhibit I had ever seen. It was called "creatures of light" and it had as many examples as it could pack into one space of all the plants, mushrooms, and animals that glow in nature.

Several light bulbs went off in my head and in front of my eyes that day.

The most exciting idea I had came when I stood staring at a glowing plastic model of  the species Pyrodinium bahamense whirling fire creature of the Bahamas. Mesmerized by the pulsating glow of the floating orb in front of me I could not stop thinking how I wanted this as a Christmas ornament for my mother.

Exiting the exhibit through the gift shop I saw a paucity of gifts available that really captured the excitement of the exhibit, no whirling fire creature ornaments, no glowing oyster mushroom figurines. After thinking about it overnight I had an a-Ha moment this morning.

What if I built a living-room sized model of the phylogenetic tree of life, and then put pulsating, glowing LED lights at each branch where we see a species has evolved bioluminescence? What if I went further and put model mycelium strands between the branches to highlight the possibility of horizontal gene transfer in nature? And what if this item then showed up in households around the world in December? I have chills just thinking about it. A way to turn householdss into science classrooms, turning a cherished holiday into a "teachable moment" in evolutionary biology. This is brilliant! Quite literally. 

How can I make this reality? How can I accomplish this? I need tools, materials and a work space but most of all I need you.

I am asking you to be Part of this, own a part of this twist on tradition. Come with me as I decorate the tree of life with lights! Donors can send their photographs to me and I will weave these still images to make you tube videos promoting the phylogenetic Christmas tree. Please visit the kickstarter page for this project and help me launch the Phylogenetic Christmas tree (I'll have it up tonight.

Carl Sagan envisioned science as a "candle in the dark" a candle lighting the shadows in a demon haunted world. My wish is that the phylogenetic Christmas tree becomes a torch for science in homes around the world. Please Kick-Start me.

Link to kickstarter page will appear here tonight after I record the promo using a prop I picked up at the Natural History Museum. Stay tuned.

Monday, June 4, 2012

On Internet Censorship

"When various members of congress become upset with the content they see on the net and want to suppress it, I feel compelled to remind them that they would not be sitting where they are sitting were it not for anonymous tracks published in the 18th century that incited the Americans to revolt against the British."
~Vinton Cerf - one of the fathers of the Internet

Quote from his appearance at the 2012 World Science Festival in New York City.
Speaks directly to the Origin Story of Tom Paine's Ghost!

Microbial Cloud, our inner ecostystem

Jonathan Eisen is a professor studying phylogenomics at UC Davis. He also happens to be an open access ROCK STAR. Here is a talk from the TEDMED conference in DC last month.


Sunday, June 3, 2012

Gecko Footed Robot

Robert J. Full speaks during Radical Innovation; a free panel at the 2012 World Science Festival in New York City. He explains amazing gecko toe technology.


Biomimicy of the lung!

Don Ingber walks us through his synthetic lung. This talk was part of the free event -Radical Innovation- at the 2012 World Science Festival in New York City.

Thursday, May 31, 2012

I select Baba Brinkman!

WOW! is all I have to say about the newly released Evolution Rap; a guide to artifical selection. This video was specially released to coincide with the World Science Festival for which I am happily blogging, tweeting, opinionating away.  Tom Paine's Ghost proudly presents - Baba Brinkman. Read Baba's full write up over at the WSF group blog!


This post comes to you direct from the north reading room at the lovely New York Public Library. When you visit the city I would put this place on your list for a nice free place to stop and rest :)

Monday, May 28, 2012

Good for Goodness' Sake?


I have decided to focus my "homework" leading up to the World Science Festival on E.O. Wilson and his recent change of mind regarding a long-held tenet of evolutionary biology - inclusive fitness. The theory of inclusive fitness provides a logical and mathematical framework to rationalize kin-selection. Kin-selection explains why behavioral traits such as self-sacrifice come to be in certain species. Although it appears an organism is sacrificing their life for the "greater-good" they are really just behaving that way so that their genes can be passed on through their relatives who they are trying to help survive. Wilson has abandoned the idea that altruistic behavior emerges out of the struggle for existence as previously explained by a simple equation championed by none other that HIMSELF at an earlier stage in his life. The equation is rB>C. In which r is a relatedness factor B is the fitness Benefit to the altruistic organism and C is the Cost of genetic fitness to the organism for carrying out the act of altruism. This equation was put forth and formalized by the British evolutionary biologist W.D. Hamilton in the 1960's.

So why has Wilson changed his mind about inclusive fitness? In a 2010 paper in the prestigious scientific journal Nature Wilson, along with colleagues Martin Nowak and Corina Tarnita claim there is not enough evidence in the real world of organisms who display altruistic behavior that follow the rule rB>C. They go further to say that the factors in the equation, B and C are too difficult to quantify.  Wilson admits the equation is simple, elegant, and alluring however he maintains that it is too simple and needs revision.

Wilson's flip-flop (btw, I am not using flip-flop in a negative way here as I think in science changing one's mind is a virtue not a vice) has caused an uproar in the scientific community drawing heavy criticism from some of the most vocal evolutionary biologists including Jerry Coyne and Richard Dawkins.  Wilson's critics have said he is using his authority to make assumptions without backing up his claims with real-world data (though Wilson does cite termite and ambrosia beetle societies). Wilson fires back at them with the same criticism, saying they have a lack of data on their side (though they do cite sawfly, wasp and bee societies). This makes for the juiciest kind of intellectual debate, one that sends scientists out in the field in search for more evidence.

Meanwhile, Wilson's apparent embrace of "group-selection" has opened the flood-gates for scholars from the humanities to jump on board the cooperation-train and use "group-selection" to explain social phenomenon like the persistence of religion in human society and the rapid growth of social networks. Among these are psychologist Jonathan Haidt and social commentator David Brooks. The worry here is that the scientific debate over evidence will be overlooked by the hungry mobs of humanitarians so eager to extract rationale for morals out of biology. 

I am excited to go into this debate and try as I might to filter out the wheat from the chaff when it comes to sound-science.  It gets particularly noisy when morals get involved. I have seen this before at the World Science Festival as I covered the last "Faith and Science" discussion panel in 2010. My big worry is that the conversation will devolve into a silly argument about the participants underlying motives as the festival is in large part funded by a controversial organization called the John Templeton Foundation.  Compounding this fear of mine is that Matin Nowak (the Austrian born, Harvard mathematician, and co-author of E.O.Wilson's) has received many millions of dollars form the Templeton foundation for his research.  Indeed, many of the intellectuals in the Wilson camp are notorious in the scientific community for receiving money from Templeton (Jonathan Haidt winning the Templeton prize in 2001.)  My hope is that the conversation can stick to the science and not get railroaded by money and politics. 

This post has been entered into the National Evolutionary Synthesis Center's travel award contest. Winner's will receive money to help pay for the travel expenses for attending the Science Online conference to be held at the end of January 2013 in Raleigh, North Carolina. Apply for the travel award here!

What is the World Science Festival?

MISSION OF THE WORLD SCIENCE FESTIVAL 

To cultivate and sustain a general public informed by the content of science, inspired by its wonder, convinced of its value, and prepared to engage with its implications for the future. The World Science Festival takes science out of the laboratory and into the streets, theaters, museums, and public halls of New York City, making the esoteric understandable and the familiar fascinating. 

So said my volunteer handbook last year anyway. I am excited to be going back this week for a third consecutive year of blogging the World Science Festival. Please have a look at the event list and help me decide where to focus my attention while on Manhattan. My love affair with this smörgåsbord of science continues to mature. From my first year of volunteering where I darted back and forth over the island, via bus, subway, or taxi carrying VIP packages to festival speakers, to last year's adventure blogging about the nature of uncertainty, the Moth Story-telling series at the Player's Club, and the troubled history of portrait two chemists. The ubiquity of the maestro overseeing it all - Brian Greene - like a symphony conductor with an entire city as his stage, has been a perpetual pleasure to observe. I have no doubt that this year will be filled with as many new connections, dialogues, and overall syntheses as year's past.

Bonus! This year I will be there for the famed Manhattanhenge! Score :)